Before using the diagnostic bullseye diagram above, you need to stop shooting off hand and shoot from a benchrest. THAT is the only way you will best determine if it is the hardware (gun) or the software (shooter) that needs any adjusting.
SiG factory sights are the dot (front sight) and post (rear sight) style where a single verticle line is painted below the window notch in the rear sight. UNLESS you have been told or trained on how to properly allign this configuration of sights, you WILL be off the mark.
Traditionally SiG has gone with the philosophy that one superimposes the dot on the POI, so using the standard OEM sights on a SiG - one has to "dot the I" [see Image 3 below]. Conversely, the traditional training for 1911's is the "six o'clock low" hold on the sights [see Image 1 below]. Completely different philosophy and if this is the only training you have, you will be WAY off when shooting a SiG.
http://img.photobucket.com/albums/v4...ightImages.jpg
One thing to keep in mind is that 3 dot sights have some inherant liabilities when one employs them. Ensuring the tops of the front and rear sights are flat and alligned as illustrated best in Image 2 being foremost. Thus I recommend you use a rest as shooting off hand add way too many variables in this particular diagnostic endeavor. Minimizing the variabilities will most efficiently get you to the core issue, whether that is sight size, sight allignment (boresighted or windage adjusted) or your sight picture and hold.
In 9mm and .357 SIG, nearly all SiG's come out of the factory with size #8 Meprolights front and back. There are sometimes a few anomolies during the production run that will require a different height be installed for proper boresighting. Meprolight is also the current vendor for SiG's OEM Night Sights, used to be trijicon but the change was made several years ago. In .40 and .45 most leave the factory with #6 sights front and back.
Eliminate as many variables as you can and fire a few 5 shot groups. If you can, have someone else do the same. you will not be exercising many marksmanship skills with the exception of trigger squeeze so don't get all hung up on your elbows being bent, locking your wrist, sticking your tongue out while you shoot or anything else. Think machine - mechanical repetition of movement that is duplicated exactly every time.
You should find out relatively quickly where the problem lies. Report back and go from there. If you do have to swap sights, fronts and backs aren't sold seperately so you'll be buying a set (1 of each). There are vendors that have mix and match sized sets (ie. #6 front and a #8 rear) but we'll cross that bridge when we get to it.